STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2210TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpa:RPA2047 TrapT family, DctP subunit, C4-dicarboxylate periplasmic binding protein. (334 aa)    
Predicted Functional Partners:
RPE_2212
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpd:RPD_2115 TRAP dicarboxylate transporter-DctM subunit.
 
 0.994
RPE_2211
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rpd:RPD_2114 tripartite ATP-independent periplasmic transporter, DctQ component.
 
  
 0.961
RPE_2875
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpb:RPB_2685 TrapT DctQ-M fusion permease, dicarboxylate transport.
  
 0.947
RPE_3805
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpb:RPB_3580 TRAP dicarboxylate transporter DctM subunit.
  
 0.856
RPE_3807
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpb:RPB_3582 TRAP dicarboxylate transporter DctP subunit.
  
   
 0.627
RPE_3806
KEGG: rpb:RPB_3581 TrapT family, DctQ subunit, C4-dicarboxylate transport.
  
  
 0.582
RPE_1982
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_2071 TRAP dicarboxylate transporter-DctM subunit.
 
   
 0.581
RPE_4461
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_4399 TRAP transporter, 4TM/12TM fusion protein.
  
     0.556
RPE_0098
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sme:SMc04283 putative transmembrane protein.
 
   
 0.546
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
       0.542
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.