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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2247KEGG: rpc:RPC_3207 putative cytochrome c precursor. (104 aa)    
Predicted Functional Partners:
RPE_0017
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: rpc:RPC_0014 cytochrome c oxidase, cbb3-type, subunit II.
  
 
 0.852
RPE_0018
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: rpc:RPC_0015 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.818
RPE_1740
PFAM: cytochrome c, class I; KEGG: rpc:RPC_4040 hypothetical protein.
 
  
 0.740
RPE_3065
KEGG: rpa:RPA2069 hypothetical protein.
  
 
 0.705
RPE_3860
TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: rpa:RPA0134 hydrogenase gamma-fused hydrogenase large and small subunit.
    
   0.683
RPE_3003
KEGG: rpb:RPB_3156 hypothetical protein.
  
     0.682
RPE_1676
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_1647 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 
 0.653
RPE_3067
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpa:RPA4459 putative flavocytochrome c sulfide dehydrogenase, flavoprotein subunit.
   
 
 0.653
RPE_3068
Sulfide dehydrogenase (flavoprotein); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpd:RPD_4248 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 
 0.653
RPE_3985
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpd:RPD_2380 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 
 0.653
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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