STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2252PFAM: protein of unknown function DUF849; KEGG: rpa:RPA2141 hypothetical protein. (288 aa)    
Predicted Functional Partners:
RPE_3365
PFAM: cyclase family protein; KEGG: rpd:RPD_3020 putative cyclase.
  
    0.824
RPE_1046
PFAM: Cupin 2, conserved barrel domain protein; KEGG: rpc:RPC_0980 cupin 2, conserved barrel.
  
    0.800
RPE_2251
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rpc:RPC_3204 transcriptional regulator, AraC family.
 
     0.613
RPE_2253
PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_3261 AMP-dependent synthetase and ligase.
       0.573
RPE_2139
KEGG: rpc:RPC_3277 hypothetical protein.
 
  
 0.457
RPE_2256
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_2206 enoyl-CoA hydratase/isomerase.
    
 0.437
RPE_4078
KEGG: rpc:RPC_3950 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
 
   
 0.433
RPE_2254
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rpc:RPC_3201 propionyl-CoA carboxylase.
       0.422
RPE_2255
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpd:RPD_2205 carbamoyl-phosphate synthase L chain, ATP-binding.
       0.415
RPE_0674
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rpb:RPB_4604 3-hydroxyacyl-CoA dehydrogenase.
  
  
 0.404
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.