STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2255PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpd:RPD_2205 carbamoyl-phosphate synthase L chain, ATP-binding. (671 aa)    
Predicted Functional Partners:
RPE_2254
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rpc:RPC_3201 propionyl-CoA carboxylase.
 0.998
RPE_2987
Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 
 0.950
RPE_2249
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpb:RPB_3266 acyl-CoA dehydrogenase-like.
  
 0.929
RPE_2256
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_2206 enoyl-CoA hydratase/isomerase.
 
 0.929
accD
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.
 
 0.928
accA
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
 
 
 0.913
RPE_2380
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rpc:RPC_3097 propionyl-CoA carboxylase.
 
 0.913
RPE_2912
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rpc:RPC_2782 propionyl-CoA carboxylase.
 0.902
RPE_3541
PFAM: carboxyl transferase; KEGG: rpc:RPC_3397 carboxyl transferase.
 
 0.898
RPE_2537
TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: rpc:RPC_2418 biotin--acetyl-CoA-carboxylase ligase.
 
  
 0.883
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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