STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2275PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20. (1067 aa)    
Predicted Functional Partners:
RPE_0787
KEGG: rpc:RPC_0625 hypothetical protein.
  
    0.656
RPE_0667
PFAM: protein of unknown function DUF1192; KEGG: rpc:RPC_0791 protein of unknown function DUF1192.
  
     0.594
RPE_3593
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: nha:Nham_1535 monooxygenase, FAD-binding.
  
     0.553
RPE_3448
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: bja:blr4803 two-component hybrid sensor and regulator.
  
     0.525
RPE_0033
PFAM: Alkaline phosphatase; KEGG: rpc:RPC_0030 alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
     0.511
RPE_0646
PFAM: protein of unknown function DUF423; KEGG: rpc:RPC_0815 protein of unknown function DUF423.
  
     0.504
RPE_4730
KEGG: rpc:RPC_4765 hypothetical protein.
  
     0.476
RPE_1974
KEGG: sme:SMa1198 possible copper export protein.
  
     0.473
RPE_2314
KEGG: rpc:RPC_3142 hypothetical protein.
  
     0.455
RPE_2329
KEGG: nha:Nham_1646 hypothetical protein.
  
     0.416
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.