STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2278PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_3176 alpha/beta hydrolase fold. (255 aa)    
Predicted Functional Partners:
RPE_2277
PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_3177 alpha/beta hydrolase fold.
 
     0.786
RPE_0133
PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29.
    
  0.557
RPE_0134
PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29.
    
  0.557
RPE_2276
PFAM: regulatory protein, MarR; KEGG: rpc:RPC_3178 transcriptional regulator, MarR family.
 
     0.521
RPE_4494
PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: rpc:RPC_4421 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.507
RPE_2279
PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_3180 excinuclease ABC, C subunit-like.
       0.437
RPE_1617
PFAM: low temperature requirement A; KEGG: rpc:RPC_1595 low temperature requirement A.
  
     0.421
RPE_0581
KEGG: sme:SMb20651 hypothetical protein.
   
 
 0.419
RPE_1580
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpb:RPB_3757 transcriptional regulator, XRE family.
  
     0.419
RPE_2023
PFAM: phosphopantetheine-binding; KEGG: rpc:RPC_2111 phosphopantetheine-binding.
   
 
 0.419
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.