STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2287KEGG: rpc:RPC_3168 hypothetical protein. (218 aa)    
Predicted Functional Partners:
RPE_2286
KEGG: rpd:RPD_2230 hypothetical protein.
       0.764
RPE_1625
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hch:HCH_03828 lactoylglutathione lyase.
 
 
 
 0.613
RPE_3174
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rpc:RPC_3514 transcriptional regulator, XRE family.
 
 
 
 0.599
RPE_2285
PFAM: Usg family protein; KEGG: rpb:RPB_3232 hypothetical protein.
       0.583
RPE_0201
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_0473 transcriptional regulator, XRE family.
   
 
 0.545
RPE_1394
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rpc:RPC_1378 transcriptional regulator, XRE family.
   
 
 0.545
RPE_1580
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpb:RPB_3757 transcriptional regulator, XRE family.
   
 
 0.545
RPE_1593
KEGG: lxx:Lxx24252 hypothetical protein.
   
 
 0.545
RPE_2442
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: ret:RHE_CH00634 hypothetical protein.
   
 
 0.545
RPE_3411
Transcriptional regulator, XRE family; TIGRFAM: mobile mystery protein A; PFAM: helix-turn-helix domain protein; KEGG: atc:AGR_pTi_183 DNA-binding protein.
   
 
 0.545
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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