STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2296PFAM: protein of unknown function DUF403; KEGG: rpc:RPC_3158 protein of unknown function DUF403. (314 aa)    
Predicted Functional Partners:
RPE_2297
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpc:RPC_3157 protein of unknown function DUF404.
  
 0.980
RPE_2295
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpc:RPC_3159 transglutaminase-like.
  
 0.950
RPE_0085
PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpa:RPA3753 DUF404.
 
  
 0.945
RPE_2294
KEGG: rpc:RPC_3163 putative proteasome-type protease.
 
    0.915
RPE_0084
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpb:RPB_1714 transglutaminase-like.
  
 0.879
RPE_0974
PFAM: transglutaminase domain protein; KEGG: rpc:RPC_0949 transglutaminase-like.
 
  
 0.766
RPE_3666
PFAM: transglutaminase domain protein; KEGG: rpc:RPC_3627 transglutaminase-like.
 
  
 0.749
RPE_0086
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpc:RPC_1701 transglutaminase-like.
 
  
 0.693
RPE_2298
PFAM: molybdopterin binding domain; KEGG: rpc:RPC_3156 molybdopterin binding domain.
       0.448
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.