STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2307Salicylate 1-monooxygenase; PFAM: monooxygenase, FAD-binding; KEGG: rpc:RPC_3149 monooxygenase, FAD-binding. (397 aa)    
Predicted Functional Partners:
RPE_2308
KEGG: rpc:RPC_3148 hypothetical protein.
 
     0.909
RPE_2351
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_1929 ferric reductase-like transmembrane component-like.
   
    0.820
RPE_3898
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_2762 ferric reductase-like transmembrane component-like.
   
    0.820
RPE_1390
PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1374 extracellular ligand-binding receptor.
   
  
 0.697
RPE_3741
Branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor; KEGG: rpd:RPD_3510 twin-arginine translocation pathway signal.
   
  
 0.697
RPE_4602
KEGG: rpd:RPD_3864 amide-UreA binding protein.
   
  
 0.697
RPE_2310
PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_3146 alpha/beta hydrolase fold.
 
  
 0.642
RPE_2309
KEGG: rpc:RPC_3147 hypothetical protein.
       0.549
RPE_0771
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bja:blr6465 putative steroid monooxygenase.
 
 
 0.541
RPE_3214
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: eba:ebA2063 small Fe/S-containing subunit of molybdenum enzyme.
  
  
 0.513
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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