STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2323PFAM: autoinducer synthesis protein; KEGG: bja:blr1063 putative autoinducer synthase. (223 aa)    
Predicted Functional Partners:
RPE_2324
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; KEGG: bja:blr1062 transcriptional regulatory protein.
 
 
 0.991
RPE_1282
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; KEGG: rpc:RPC_2210 transcriptional regulator, LuxR family.
 
  
 0.807
RPE_4496
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: rpd:RPD_2373 regulatory protein, LuxR.
 
  
 0.802
RPE_1121
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; KEGG: rpd:RPD_2373 regulatory protein, LuxR.
  
  
 0.766
RPE_2315
KEGG: nwi:Nwi_2173 hypothetical protein.
  
     0.508
RPE_1468
Putative CheA signal transduction histidine kinases; KEGG: rpc:RPC_1449 hypothetical protein.
  
     0.503
RPE_2360
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr5512 hypothetical protein.
  
     0.443
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.