STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2340PFAM: O-methyltransferase, family 3; KEGG: rpa:RPA3404 putative O-methyltransferase. (220 aa)    
Predicted Functional Partners:
RPE_2341
PFAM: regulatory protein, TetR; KEGG: rpa:RPA3403 possible transcriptional regulator, TetR family.
 
     0.895
RPE_2913
PFAM: ETC complex I subunit conserved region; KEGG: rpb:RPB_2935 ETC complex I subunit conserved region.
  
  
 0.559
RPE_4739
PFAM: peptidase U32; KEGG: rpc:RPC_4778 peptidase U32.
  
  
 0.559
RPE_4740
PFAM: peptidase U32; KEGG: rpc:RPC_4779 peptidase U32.
  
  
 0.559
RPE_2342
KEGG: rpa:RPA3402 hypothetical protein.
       0.547
RPE_1948
PFAM: protein of unknown function DUF692; KEGG: sme:SMb20529 hypothetical protein; Belongs to the UPF0276 family.
   
    0.509
RPE_0873
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
   
    0.404
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.