Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RPE_2350 | RPE_2351 | PFAM: cytochrome b5; KEGG: rpc:RPC_1930 cytochrome b5. | PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_1929 ferric reductase-like transmembrane component-like. | 0.890 |
RPE_2350 | RPE_2352 | PFAM: cytochrome b5; KEGG: rpc:RPC_1930 cytochrome b5. | KEGG: rpc:RPC_1928 hypothetical protein. | 0.875 |
RPE_2350 | RPE_2353 | PFAM: cytochrome b5; KEGG: rpc:RPC_1930 cytochrome b5. | KEGG: rpc:RPC_3112 hypothetical protein. | 0.506 |
RPE_2351 | RPE_2350 | PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_1929 ferric reductase-like transmembrane component-like. | PFAM: cytochrome b5; KEGG: rpc:RPC_1930 cytochrome b5. | 0.890 |
RPE_2351 | RPE_2352 | PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_1929 ferric reductase-like transmembrane component-like. | KEGG: rpc:RPC_1928 hypothetical protein. | 0.875 |
RPE_2351 | RPE_2353 | PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_1929 ferric reductase-like transmembrane component-like. | KEGG: rpc:RPC_3112 hypothetical protein. | 0.506 |
RPE_2352 | RPE_2350 | KEGG: rpc:RPC_1928 hypothetical protein. | PFAM: cytochrome b5; KEGG: rpc:RPC_1930 cytochrome b5. | 0.875 |
RPE_2352 | RPE_2351 | KEGG: rpc:RPC_1928 hypothetical protein. | PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_1929 ferric reductase-like transmembrane component-like. | 0.875 |
RPE_2352 | RPE_2353 | KEGG: rpc:RPC_1928 hypothetical protein. | KEGG: rpc:RPC_3112 hypothetical protein. | 0.506 |
RPE_2353 | RPE_2350 | KEGG: rpc:RPC_3112 hypothetical protein. | PFAM: cytochrome b5; KEGG: rpc:RPC_1930 cytochrome b5. | 0.506 |
RPE_2353 | RPE_2351 | KEGG: rpc:RPC_3112 hypothetical protein. | PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_1929 ferric reductase-like transmembrane component-like. | 0.506 |
RPE_2353 | RPE_2352 | KEGG: rpc:RPC_3112 hypothetical protein. | KEGG: rpc:RPC_1928 hypothetical protein. | 0.506 |
RPE_2353 | RPE_2354 | KEGG: rpc:RPC_3112 hypothetical protein. | KEGG: rpc:RPC_3111 hypothetical protein. | 0.480 |
RPE_2354 | RPE_2353 | KEGG: rpc:RPC_3111 hypothetical protein. | KEGG: rpc:RPC_3112 hypothetical protein. | 0.480 |