STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2354KEGG: rpc:RPC_3111 hypothetical protein. (349 aa)    
Predicted Functional Partners:
RPE_2583
OmpA/MotB; KEGG: rpc:RPC_2459 OmpA/MotB.
 
  
 0.804
RPE_2011
PFAM: OmpA/MotB domain protein; KEGG: rpc:RPC_2101 OmpA/MotB.
 
  
 0.794
RPE_4372
PFAM: OmpA/MotB domain protein; KEGG: rpa:RPA2897 possible chemotaxis protein MotB2.
 
  
 0.772
RPE_1543
KEGG: rpc:RPC_1512 tetratricopeptide TPR_2.
 
     0.764
RPE_4833
TIGRFAM: MJ0042 family finger-like protein; KEGG: rpc:RPC_4868 zinc finger/thioredoxin putative.
  
     0.761
RPE_1532
KEGG: rpc:RPC_1498 putative flagellar assembly protein.
  
     0.757
RPE_3435
PFAM: surface presentation of antigens (SPOA) protein; KEGG: rpc:RPC_3347 surface presentation of antigens (SpoA) protein.
  
     0.736
RPE_0967
KEGG: rpc:RPC_0943 putative flagellar assembly protein FliH.
  
    0.729
RPE_1505
Conserved hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
    0.728
RPE_1040
PFAM: flagellar hook-length control protein; KEGG: rpc:RPC_0986 flagellar hook-length control protein.
  
     0.718
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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