STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2389PFAM: MaoC domain protein dehydratase; KEGG: rpc:RPC_3089 MaoC-like dehydratase. (164 aa)    
Predicted Functional Partners:
RPE_2390
PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_3088 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.938
RPE_0040
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_0707 alcohol dehydrogenase, zinc-binding.
 
 0.793
RPE_2304
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_2248 alcohol dehydrogenase, zinc-binding.
 
 0.685
RPE_2388
PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA3445 probable acetyl-CoA synthetase.
  
  
 0.650
RPE_0532
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpb:RPB_4675 acyl-CoA dehydrogenase-like.
 
 0.622
RPE_0674
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rpb:RPB_4604 3-hydroxyacyl-CoA dehydrogenase.
 
 0.597
RPE_3618
PFAM: aminoglycoside phosphotransferase; KEGG: rpb:RPB_2261 aminoglycoside phosphotransferase.
 
 
 0.576
RPE_1795
PFAM: protein of unknown function DUF35; KEGG: bja:bll2959 hypothetical protein.
 
   0.575
RPE_3776
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpd:RPD_3550 acyl-CoA dehydrogenase-like.
 
 0.568
RPE_3619
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpa:RPA3289 acyl-CoA dehydrogenase.
 
 0.560
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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