STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2407PFAM: MgtC/SapB transporter; KEGG: pcr:Pcryo_2508 MgtC/SapB transporter. (174 aa)    
Predicted Functional Partners:
RPE_2926
KEGG: rpc:RPC_2804 hypothetical protein.
  
  
 0.798
RPE_2585
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: rpc:RPC_2461 ATPase, E1-E2 type.
  
 
 0.707
RPE_4597
Formamidase; PFAM: Acetamidase/Formamidase; KEGG: rpd:RPD_3859 formamidase.
   
    0.662
RPE_2951
KEGG: nha:Nham_2318 hypothetical protein.
  
 
 0.617
RPE_3717
KEGG: rpc:RPC_3679 trehalose synthase-like; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
  
    0.467
RPE_4837
PFAM: Pyridoxal-dependent decarboxylase; KEGG: rpc:RPC_4871 pyridoxal-dependent decarboxylase.
   
  
 0.451
RPE_1180
PFAM: type III secretion system inner membrane R protein; KEGG: rpc:RPC_1119 type III secretion system inner membrane R protein.
    
   0.434
RPE_1555
Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
    
   0.434
RPE_3665
KEGG: rpc:RPC_3624 hypothetical protein.
   
    0.426
RPE_1887
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: rpc:RPC_1252 transcriptional regulator, AraC family.
 
    0.404
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.