STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2409PFAM: Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: rpc:RPC_2358 Sel1. (296 aa)    
Predicted Functional Partners:
RPE_2408
KEGG: rpc:RPC_2357 hypothetical protein.
       0.548
RPE_1363
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_1329 AAA ATPase, central region.
   
 0.516
RPE_2469
PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rme:Rmet_2342 AAA ATPase, central region.
   
 0.516
RPE_3594
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_3455 ABC transporter related.
  
  
  0.476
RPE_4720
KEGG: rpc:RPC_4775 Sel1-like.
 
    
0.420
mnmG
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
   
   0.408
RPE_1156
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1095 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.408
RPE_1552
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1518 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.408
RPE_1447
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1426 ABC transporter related.
  
  
  0.406
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.