Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2467KEGG: rme:Rmet_2341 hypothetical protein. (166 aa)    
Predicted Functional Partners:
RPE_2468
KEGG: pol:Bpro_5159 hypothetical protein.
   
   0.954
RPE_2494
KEGG: vvu:VV12027 hypothetical protein.
   
   0.807
RPE_2466
KEGG: rme:Rmet_2340 hypothetical protein.
       0.805
RPE_2469
PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rme:Rmet_2342 AAA ATPase, central region.
       0.802
RPE_2465
KEGG: rme:Rmet_2339 hypothetical protein.
       0.720
RPE_2470
KEGG: bja:bsr0071 hypothetical protein.
       0.597
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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