STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2632Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (497 aa)    
Predicted Functional Partners:
RPE_1416
KEGG: rpc:RPC_1393 hypothetical protein.
  
     0.772
RPE_1474
KEGG: rpc:RPC_1455 hypothetical protein.
  
   
 0.772
RPE_1408
KEGG: rpc:RPC_1401 hypothetical protein.
  
     0.771
RPE_4140
KEGG: rpc:RPC_4085 hypothetical protein.
  
     0.769
RPE_1873
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_1780 peptidoglycan-binding domain 1.
  
     0.768
RPE_2362
PFAM: OmpA domain protein transmembrane region-containing protein; porin; KEGG: rpc:RPC_3103 OmpA-like transmembrane region.
  
 
 0.760
RPE_0728
Porin; PFAM: porin; KEGG: rpc:RPC_0748 putative outer membrane protein.
  
 
 0.757
RPE_1988
KEGG: rpc:RPC_2077 hypothetical protein.
  
     0.756
RPE_0434
PFAM: protein of unknown function DUF1150; KEGG: rpc:RPC_0410 protein of unknown function DUF1150.
  
     0.740
RPE_2794
PFAM: Invasion associated locus B family protein; KEGG: rpc:RPC_2614 invasion associated locus B.
  
     0.730
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.