STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2633PFAM: Lytic transglycosylase, catalytic; KEGG: rpc:RPC_2890 lytic transglycosylase, catalytic. (772 aa)    
Predicted Functional Partners:
RPE_2634
KEGG: rpc:RPC_2889 hypothetical protein.
 
     0.624
RPE_0781
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.573
RPE_2973
KEGG: rpc:RPC_2847 hypothetical protein.
  
     0.572
RPE_4593
KEGG: rpc:RPC_1137 hypothetical protein.
  
     0.569
RPE_2090
PFAM: Extensin family protein; KEGG: rpc:RPC_2178 extensin-like.
  
     0.561
RPE_2895
KEGG: rpc:RPC_2763 putative outer-membrane protein precursor.
  
     0.509
RPE_1146
ATPase, FliI/YscN family; KEGG: rpc:RPC_1086 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase.
  
  
 0.503
RPE_4269
Flagellar protein export ATPase FliI; KEGG: rpc:RPC_4232 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase.
  
  
 0.503
fliE
PFAM: flagellar hook-basal body complex protein FliE; KEGG: rpc:RPC_1096 flagellar hook-basal body complex protein FliE.
  
  
 0.500
fliE-2
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rpc:RPC_1519 flagellar hook-basal body complex protein FliE.
  
  
 0.500
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.