STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2658TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: rpc:RPC_3004 putative general secretion pathway protein J. (195 aa)    
Predicted Functional Partners:
RPE_2660
KEGG: bja:bll6018 probable general secretion pathway protein H precursor.
     
 0.763
RPE_2661
TIGRFAM: general secretion pathway protein G; PFAM: secretion system protein G; KEGG: bja:bll6019 probable general secretion pathway protein G precursor.
     
 0.763
RPE_2662
PFAM: type II secretion system protein; KEGG: bja:bll6020 probable general secretion pathway protein F.
     
 0.762
RPE_2659
TIGRFAM: Prepilin-type cleavage/methylation-like.
       0.675
RPE_2663
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: bja:bll6021 general secretion pathway protein E.
     
 0.589
RPE_2666
PFAM: Fimbrial assembly family protein; KEGG: bja:bll6015 putative general secretory pathway protein L.
     
 0.584
RPE_2668
KEGG: bja:blr6023 general secretion pathway protein O.
     
 0.571
RPE_2667
Hypothetical protein; KEGG: bja:bll6016 putative general secretory pathway protein K.
       0.448
RPE_2669
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rpc:RPC_3010 type II and III secretion system protein.
       0.432
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.