STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2730TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_2550 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine. (401 aa)    
Predicted Functional Partners:
RPE_2731
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_2551 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
0.999
RPE_2729
TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3; KEGG: rpc:RPC_2549 lysine-arginine-ornithine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.997
RPE_2732
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2561 ABC transporter related.
 
 0.997
RPE_0535
SMART: extracellular solute-binding protein, family 3; KEGG: rpa:RPA4797 ABC transporter, amino acid binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.968
RPE_0737
PFAM: extracellular solute-binding protein, family 3; KEGG: rpc:RPC_0729 extracellular solute-binding protein, family 3.
 
  
 0.661
RPE_3766
PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_3728 extracellular solute-binding protein, family 5.
  
  
  0.454
RPE_2793
PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_2613 extracellular solute-binding protein, family 5.
  
  
  0.444
RPE_3767
Extracellular solute-binding protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_3729 extracellular solute-binding protein, family 5.
  
  
  0.444
RPE_2728
TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rpc:RPC_2548 cystathionine beta-lyase.
       0.436
RPE_4153
PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpd:RPD_3897 protein of unknown function DUF6, transmembrane.
  
     0.401
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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