STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2784KEGG: rpc:RPC_2604 hypothetical protein. (465 aa)    
Predicted Functional Partners:
RPE_4423
KEGG: rpc:RPC_4360 hypothetical protein.
 
  
 0.794
RPE_3316
KEGG: rpd:RPD_2989 hypothetical protein.
  
     0.772
RPE_4338
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4278 hypothetical protein.
  
     0.765
RPE_3446
KEGG: rpa:RPA3183 hypothetical protein.
  
     0.763
RPE_2076
KEGG: rpc:RPC_2169 hypothetical protein.
  
     0.752
RPE_2141
PFAM: AsmA family protein; KEGG: rpc:RPC_3274 AsmA.
  
     0.749
RPE_1276
KEGG: rpc:RPC_1229 hypothetical protein.
  
     0.747
RPE_2524
TIGRFAM: methyltransferase FkbM family; KEGG: rpc:RPC_2405 methyltransferase FkbM.
  
     0.744
RPE_0740
KEGG: rpc:RPC_0720 hypothetical protein.
  
     0.743
RPE_0876
KEGG: rpa:RPA1154 hypothetical protein.
  
     0.738
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.