STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2802KEGG: dar:Daro_1107 hypothetical protein. (606 aa)    
Predicted Functional Partners:
RPE_1322
PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: jan:Jann_0393 NAD-dependent epimerase/dehydratase.
   
    0.661
RPE_3150
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: rpc:RPC_1972 NmrA-like.
   
    0.661
RPE_2171
KEGG: tth:TTC1428 hypothetical protein.
  
  
 0.630
RPE_2801
KEGG: rpd:RPD_2667 hypothetical protein.
       0.590
RPE_3662
PFAM: permease; KEGG: rpb:RPB_1645 permease.
   
    0.510
RPE_0420
KEGG: rpc:RPC_0255 hypothetical protein.
  
     0.485
RPE_4240
TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: sco:SCO4880 transferase.
   
    0.456
RPE_3191
PFAM: Radical SAM domain protein; KEGG: rpa:RPA2614 hypothetical protein.
  
     0.441
RPE_2993
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_2874 radical SAM.
  
     0.440
RPE_0419
KEGG: rpc:RPC_0256 hypothetical protein.
  
     0.427
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.