STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2829PFAM: protein of unknown function DUF1212; KEGG: rpc:RPC_2893 protein of unknown function DUF1212. (268 aa)    
Predicted Functional Partners:
RPE_2830
KEGG: rpc:RPC_2892 hypothetical protein.
  
 0.998
RPE_0766
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpc:RPC_0704 pyruvate flavodoxin/ferredoxin oxidoreductase-like.
 
     0.639
RPE_0832
KEGG: rpc:RPC_2959 putative outer membrane protein precursor.
  
     0.585
RPE_2828
PFAM: regulatory protein, MerR; KEGG: rpc:RPC_2678 transcriptional regulator, MerR family.
   
   0.570
RPE_4620
Agarase; KEGG: rpc:RPC_4624 hypothetical protein.
  
     0.533
RPE_4496
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: rpd:RPD_2373 regulatory protein, LuxR.
  
     0.493
ihfA
Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.466
RPE_0411
PFAM: histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0263 histidine kinase, HAMP region.
  
     0.463
RPE_0767
Glutamate synthase (NADPH) small chain; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: rpa:RPA4722 possible glutamate synthase, small subunit.
  
     0.415
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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