STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2863PFAM: alpha/beta hydrolase fold; KEGG: rpd:RPD_2713 alpha/beta hydrolase fold. (315 aa)    
Predicted Functional Partners:
RPE_0416
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpb:RPB_1973 epoxide hydrolase.
  
 0.846
RPE_0133
PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29.
    
  0.557
RPE_0134
PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29.
    
  0.557
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.537
RPE_2866
DNA polymerase III, delta prime subunit; KEGG: rpc:RPC_2704 ATPase involved in DNA replication-like.
       0.534
RPE_2864
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rpc:RPC_2702 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
       0.521
RPE_3641
PFAM: alpha/beta hydrolase fold; KEGG: bja:bll3759 hypothetical protein.
  
     0.500
RPE_2869
KEGG: rpa:RPA2779 possible hydrolase.
       0.452
RPE_0771
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bja:blr6465 putative steroid monooxygenase.
 
 
 0.444
RPE_0581
KEGG: sme:SMb20651 hypothetical protein.
   
 
 0.419
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.