STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2871KEGG: sil:SPO2657 ACC deaminase/D-cysteine desulfhydrase family; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit. (335 aa)    
Predicted Functional Partners:
RPE_2728
TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rpc:RPC_2548 cystathionine beta-lyase.
     
 0.903
RPE_2035
3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; KEGG: rpa:RPA3613 putative thiosulfate sulfurtransferase.
    
  0.902
RPE_2872
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bpm:BURPS1710b_0969 major facilitator family transporter.
     
 0.742
RPE_2873
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cvi:CV0615 hypothetical protein.
       0.567
RPE_2870
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpa:RPA0809 transcriptional regulator, LysR family.
   
   0.532
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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