STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2886PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rpb:RPB_2711 hypothetical protein. (440 aa)    
Predicted Functional Partners:
RPE_2799
PFAM: Integral membrane protein TerC; KEGG: bja:bll4584 hypothetical protein.
 
    0.906
RPE_2887
KEGG: rpb:RPB_2712 hypothetical protein.
       0.875
RPE_2885
TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: rpc:RPC_2752 MazG family protein.
     
 0.580
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.574
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.488
RPE_1876
KEGG: rpc:RPC_1783 hypothetical protein.
   
    0.412
RPE_3835
KEGG: rpc:RPC_3467 propeptide, PepSY amd peptidase M4.
   
    0.412
RPE_3896
Membrane protein-like protein; KEGG: rpc:RPC_4933 propeptide, PepSY amd peptidase M4.
   
    0.412
RPE_4900
PFAM: Propeptide, PepSY amd peptidase M4; KEGG: rpc:RPC_4933 propeptide, PepSY amd peptidase M4.
   
    0.412
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
    0.410
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.