STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2900KEGG: rpb:RPB_2725 hypothetical protein. (131 aa)    
Predicted Functional Partners:
RPE_4552
HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.727
RPE_0116
PFAM: protein of unknown function DUF937; KEGG: rpc:RPC_0555 protein of unknown function DUF937.
 
     0.626
RPE_0787
KEGG: rpc:RPC_0625 hypothetical protein.
 
     0.622
RPE_2989
Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: rpc:RPC_2870 multi-sensor signal transduction histidine kinase.
 
    0.499
RPE_0234
PFAM: protein of unknown function DUF1236; KEGG: rpc:RPC_0372 hypothetical protein.
  
     0.445
RPE_2901
KEGG: rpd:RPD_2771 hypothetical protein.
       0.421
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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