STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2913PFAM: ETC complex I subunit conserved region; KEGG: rpb:RPB_2935 ETC complex I subunit conserved region. (111 aa)    
Predicted Functional Partners:
RPE_2635
PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: rpc:RPC_2888 NADH:ubiquinone oxidoreductase 17.2 kD subunit.
  
    0.776
RPE_0150
PFAM: Methyltransferase type 11; KEGG: rpc:RPC_0522 methyltransferase.
  
     0.748
RPE_3768
PFAM: cytochrome c, class I; KEGG: rpc:RPC_3730 cytochrome c, class I.
  
     0.745
RPE_2529
NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
  
    0.732
RPE_1433
PFAM: protein of unknown function DUF185; KEGG: rpc:RPC_1412 protein of unknown function DUF185.
  
     0.675
RPE_0501
PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_0340 alpha/beta hydrolase fold.
  
     0.623
RPE_0786
PFAM: Disulphide bond formation protein DsbB; KEGG: rpc:RPC_0627 disulphide bond formation protein DsbB.
  
    0.605
nuoC-2
NADH (or F420H2) dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.
  
    0.604
RPE_2914
KEGG: rpc:RPC_2784 putative OpgC protein.
       0.570
RPE_2340
PFAM: O-methyltransferase, family 3; KEGG: rpa:RPA3404 putative O-methyltransferase.
  
  
 0.559
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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