STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2932TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_2811 lytic murein transglycosylase. (403 aa)    
Predicted Functional Partners:
RPE_2933
KEGG: rpc:RPC_2812 membrane protein.
       0.875
RPE_2931
PFAM: peptidase M23B; KEGG: rpc:RPC_2810 peptidase M23B.
     
 0.730
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.586
RPE_2101
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rpc:RPC_2188 peptidoglycan glycosyltransferase.
   
 
 0.532
RPE_4404
PFAM: cell wall hydrolase, SleB; KEGG: rpc:RPC_4342 cell wall hydrolase, SleB.
 
   
 0.531
RPE_3407
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: rpc:RPC_3328 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.458
RPE_2929
PFAM: tRNA synthetase, class II (D, K and N); KEGG: rpc:RPC_2808 lysine--tRNA ligase.
       0.452
RPE_2098
PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: rpc:RPC_2185 negative regulator of AmpC, AmpD.
     
 0.449
RPE_2928
TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: rpc:RPC_2807 protein of unknown function DUF160.
       0.449
RPE_2978
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: rpc:RPC_2853 N-acetylmuramoyl-L-alanine amidase.
     
 0.448
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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