STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2981PFAM: peptidase M48, Ste24p; KEGG: rpc:RPC_2861 peptidase M48, Ste24p. (470 aa)    
Predicted Functional Partners:
RPE_0270
PFAM: peptidase M23B; KEGG: rpc:RPC_0165 peptidase M23B.
 
 
 
 0.746
RPE_2980
PFAM: aminotransferase, class I and II; Allinase-like; KEGG: rpc:RPC_2860 aminotransferase, class I and II.
       0.598
RPE_3295
KEGG: rpc:RPC_2310 hypothetical protein.
 
  
 0.565
RPE_1431
KEGG: rpc:RPC_1410 hypothetical protein.
  
     0.556
RPE_4708
Putative TolA; KEGG: rpc:RPC_4752 putative TolA.
 
    0.522
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.471
RPE_2600
KEGG: rpc:RPC_2476 hypothetical protein.
  
    0.459
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
  
  
 0.458
RPE_2394
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; KEGG: rpb:RPB_3437 outer membrane autotransporter.
  
   0.442
RPE_4426
KEGG: rpc:RPC_4363 glycosyl transferase, family 2.
 
   
 0.428
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.