STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2983PFAM: DSBA oxidoreductase; KEGG: rpc:RPC_2862 DsbA oxidoreductase. (255 aa)    
Predicted Functional Partners:
RPE_0786
PFAM: Disulphide bond formation protein DsbB; KEGG: rpc:RPC_0627 disulphide bond formation protein DsbB.
 
 
 0.791
RPE_4436
Conserved hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_4372 twin-arginine translocation pathway signal.
 
   
 0.653
RPE_0315
TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: rpc:RPC_0209 periplasmic protein thiol.
 
 
 0.536
RPE_2984
Hypothetical protein.
       0.491
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.467
RPE_4843
PFAM: Redoxin domain protein; KEGG: rpc:RPC_4876 thioredoxin-like.
  
 
 0.462
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
 
   
 0.450
RPE_2982
PFAM: alpha/beta hydrolase fold; KEGG: atc:AGR_C_2897 hypothetical protein.
       0.445
RPE_0713
KEGG: rpc:RPC_0787 hypothetical protein.
 
   
 0.434
RPE_1557
KEGG: rpc:RPC_1524 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
 
 
 0.431
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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