STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3003KEGG: rpb:RPB_3156 hypothetical protein. (454 aa)    
Predicted Functional Partners:
RPE_3002
KEGG: rpb:RPB_3155 hypothetical protein.
 
     0.969
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.819
RPE_4371
KEGG: rpb:RPB_1632 hypothetical protein.
  
     0.743
RPE_0728
Porin; PFAM: porin; KEGG: rpc:RPC_0748 putative outer membrane protein.
  
     0.716
RPE_2247
KEGG: rpc:RPC_3207 putative cytochrome c precursor.
  
     0.682
RPE_3000
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: rpb:RPB_3153 adenylate/guanylate cyclase.
 
     0.647
RPE_2625
KEGG: rpb:RPB_2754 neurotransmitter-gated ion-channel ligand-binding.
  
     0.646
RPE_3552
KEGG: rpc:RPC_3407 hypothetical protein.
  
     0.645
RPE_4499
PFAM: protein of unknown function DUF1522; KEGG: rpa:RPA2297 hypothetical protein.
 
     0.634
RPE_3330
KEGG: rpa:RPA2375 hypothetical protein.
 
     0.630
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.