STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3028PFAM: protein of unknown function DUF88; KEGG: rpc:RPC_2633 protein of unknown function DUF88. (209 aa)    
Predicted Functional Partners:
RPE_3029
PFAM: Uracil-DNA glycosylase superfamily; KEGG: rpa:RPA2690 possible uracil-DNA glycosylase.
       0.697
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.688
RPE_0163
PFAM: Methyltransferase type 11; KEGG: rpc:RPC_0509 methyltransferase type 11.
  
     0.547
RPE_4393
PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: rpa:RPA1065 metal dependent phosphohydrolase.
 
     0.494
RPE_3290
PFAM: DNA polymerase III chi subunit, HolC; KEGG: rpc:RPC_2315 DNA polymerase III chi subunit, HolC.
  
     0.483
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.481
RPE_3007
PFAM: regulatory protein, MarR; KEGG: rpb:RPB_2626 transcriptional regulator, MarR family.
  
     0.456
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: rpc:RPC_0444 phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.446
RPE_0201
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_0473 transcriptional regulator, XRE family.
  
     0.443
RPE_0641
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_0686 signal transduction histidine kinase, nitrogen specific, NtrB.
  
     0.417
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.