STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3036PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpc:RPC_2625 dimethylmenaquinone methyltransferase. (246 aa)    
Predicted Functional Partners:
RPE_4326
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rpb:RPB_4234 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
    
 0.899
RPE_3527
PFAM: dihydrodipicolinate synthetase; KEGG: rpc:RPC_3385 dihydrodipicolinate synthetase; Belongs to the DapA family.
 
     0.646
RPE_1953
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rpd:RPD_2022 5-carboxymethyl-2-hydroxymuconate delta-isomerase.
    
 0.602
RPE_3035
PFAM: Cupin 2, conserved barrel domain protein; KEGG: rpc:RPC_2626 cupin 2, conserved barrel.
       0.600
RPE_0745
Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453.
 
   
 0.594
RPE_3037
TIGRFAM: conserved hypothetical protein; PFAM: Allophanate hydrolase subunit 1; KEGG: rpc:RPC_2624 hypothetical protein.
       0.560
RPE_3038
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: rpc:RPC_2623 allophanate hydrolase subunit 2.
       0.560
RPE_0746
PFAM: amidohydrolase 2; KEGG: rpb:RPB_0877 amidohydrolase 2.
 
   
 0.555
RPE_0749
PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2.
 
   
 0.534
RPE_0748
KEGG: rpa:RPA4699 possible dehydrogenase.
 
     0.502
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.