STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3047PFAM: phosphate transporter; KEGG: rpd:RPD_2335 phosphate transporter. (334 aa)    
Predicted Functional Partners:
RPE_3048
PFAM: protein of unknown function DUF47; KEGG: rpc:RPC_2947 protein of unknown function DUF47.
 
  
 0.996
RPE_1763
uroporphyrinogen-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
  
 0.773
RPE_0683
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rpc:RPC_0761 glutamate synthase (ferredoxin).
  
  
 0.584
RPE_1147
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1087 flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.501
RPE_1538
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1507 flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.501
RPE_2206
Polyphosphate:AMP phosphotransferase; PFAM: protein of unknown function DUF344; KEGG: rpc:RPC_3238 protein of unknown function DUF344.
  
  
 0.496
RPE_3041
PFAM: protein of unknown function DUF344; KEGG: ana:alr2191 hypothetical protein.
  
  
 0.496
cysC
Sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
  
 0.492
cysC-2
Sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
  
  
 0.492
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
  
  
 0.481
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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