STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3061PFAM: LemA family protein; KEGG: bja:bll2494 lemA protein. (194 aa)    
Predicted Functional Partners:
RPE_3062
PFAM: peptidase M48, Ste24p; KEGG: rpa:RPA4495 possible protease htpX homolog.
 
    0.808
RPE_4321
PFAM: protein of unknown function DUF477; KEGG: rpc:RPC_1334 protein of unknown function DUF477.
 
    0.736
RPE_3060
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: ret:RHE_CH03136 hypothetical protein.
       0.559
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.