STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3074KEGG: rpd:RPD_4254 putative sulfur oxidation protein SoxZ. (110 aa)    
Predicted Functional Partners:
RPE_3075
Thiosulfate-binding protein SoxY; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpd:RPD_4255 twin-arginine translocation pathway signal.
 
 
 0.999
RPE_3073
Sulfate thiol esterase SoxB; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 5'-Nucleotidase domain protein; KEGG: rpb:RPB_4369 twin-arginine translocation pathway signal; Belongs to the 5'-nucleotidase family.
 
 
 0.998
RPE_0849
KEGG: bja:blr6197 hypothetical protein.
 
 
 0.993
RPE_3076
KEGG: rpd:RPD_4256 hypothetical protein.
 
  
 0.991
RPE_3072
Sulfur dehydrogenase subunit SoxC; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rpd:RPD_4252 twin-arginine translocation pathway signal.
 
  
 0.990
RPE_3071
Sulfur dehydrogenase subunit SoxD; PFAM: cytochrome c, class I; KEGG: rpa:RPA4463 possible cytochrome.
 
  
 0.989
RPE_3077
KEGG: rpd:RPD_4257 hypothetical protein.
 
  
 0.984
RPE_2035
3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; KEGG: rpa:RPA3613 putative thiosulfate sulfurtransferase.
    
 0.921
RPE_3068
Sulfide dehydrogenase (flavoprotein); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpd:RPD_4248 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
   
 0.860
RPE_3067
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpa:RPA4459 putative flavocytochrome c sulfide dehydrogenase, flavoprotein subunit.
 
   
 0.857
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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