STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3142PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpc:RPC_1904 two component transcriptional regulator, LuxR family. (218 aa)    
Predicted Functional Partners:
RPE_3141
Putative signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_1905 putative signal transduction histidine kinase.
 
 
 0.971
RPE_0634
PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rpd:RPD_2405 ATP-binding region, ATPase-like.
 
 
 0.936
RPE_1203
Putative CheA signal transduction histidine kinases; PFAM: Hpt domain protein.
  
 
 0.927
RPE_2820
PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bja:blr6185 two-component response regulator.
  
  
 
0.913
RPE_2819
Signal transduction histidine kinase, glucose-6-phosphate specific; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: bja:bll6184 two-component sensor histidine kinase.
 
 
 0.870
RPE_1370
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; KEGG: rpc:RPC_1355 multi-sensor hybrid histidine kinase.
   
 
 0.856
RPE_2289
Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_3798 multi-sensor hybrid histidine kinase.
   
 
 0.846
RPE_3921
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: rpc:RPC_3798 multi-sensor hybrid histidine kinase.
   
 
 0.846
RPE_1006
Putative signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: rpd:RPD_1559 ATP-binding region, ATPase-like.
 
 
 0.805
RPE_3140
KEGG: rpc:RPC_1906 hypothetical protein.
       0.798
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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