STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3147Heme utilization protein HuvX; PFAM: protein of unknown function DUF1008; KEGG: rpc:RPC_1975 protein of unknown function DUF1008. (171 aa)    
Predicted Functional Partners:
RPE_3151
Coproporphyrinogen III oxidase, anaerobic; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_1971 radical SAM.
  
 0.936
RPE_3149
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpc:RPC_1973 TonB-dependent haem/haemoglobin receptor.
 
  
 0.841
RPE_3145
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpa:RPA2128 biopolymer transport protein ExbD/TolR.
  
  
 0.832
RPE_3146
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpa:RPA2127 putative exbB, uptake of enterochelin; tonB-dependent uptake of B colicins.
  
  
 0.819
RPE_3144
TIGRFAM: TonB family protein; KEGG: rpa:RPA2129 possible energy transducer TonB, C-terminal region.
  
    0.801
RPE_0820
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rpc:RPC_0598 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
  
 0.799
RPE_3148
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rpc:RPC_1974 antibiotic biosynthesis monooxygenase.
 
     0.756
RPE_0505
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: rpc:RPC_0437 NAD-dependent epimerase/dehydratase.
  
  
 0.673
RPE_4202
PFAM: NAD-dependent epimerase/dehydratase; KEGG: rpc:RPC_4149 NAD-dependent epimerase/dehydratase.
  
  
 0.673
RPE_3937
KEGG: rpc:RPC_3814 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.516
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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