STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3151Coproporphyrinogen III oxidase, anaerobic; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_1971 radical SAM. (470 aa)    
Predicted Functional Partners:
RPE_3147
Heme utilization protein HuvX; PFAM: protein of unknown function DUF1008; KEGG: rpc:RPC_1975 protein of unknown function DUF1008.
  
 0.936
RPE_3150
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: rpc:RPC_1972 NmrA-like.
 
     0.684
RPE_0018
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: rpc:RPC_0015 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.661
RPE_0017
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: rpc:RPC_0014 cytochrome c oxidase, cbb3-type, subunit II.
  
  
 0.585
RPE_0683
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rpc:RPC_0761 glutamate synthase (ferredoxin).
     
 0.581
RPE_3149
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpc:RPC_1973 TonB-dependent haem/haemoglobin receptor.
 
   
 0.552
RPE_0014
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpc:RPC_0011 4Fe-4S ferredoxin, iron-sulfur binding domain.
  
  
 0.550
RPE_3084
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpb:RPB_4311 4Fe-4S ferredoxin, iron-sulfur binding.
  
  
 0.550
RPE_0766
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpc:RPC_0704 pyruvate flavodoxin/ferredoxin oxidoreductase-like.
 
   
 0.545
RPE_2206
Polyphosphate:AMP phosphotransferase; PFAM: protein of unknown function DUF344; KEGG: rpc:RPC_3238 protein of unknown function DUF344.
  
    0.526
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.