STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3152KEGG: rpc:RPC_1970 hypothetical protein. (68 aa)    
Predicted Functional Partners:
RPE_3154
PFAM: transport system permease protein; KEGG: rpc:RPC_1968 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.796
hmuV
ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
  
    0.786
RPE_3153
PFAM: periplasmic binding protein; KEGG: rpc:RPC_1969 periplasmic binding protein.
     
 0.680
RPE_3156
Hypothetical protein.
       0.628
RPE_3157
KEGG: rpc:RPC_3616 hypothetical protein.
       0.628
RPE_3149
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpc:RPC_1973 TonB-dependent haem/haemoglobin receptor.
  
  
 0.490
RPE_4579
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_4540 MotA/TolQ/ExbB proton channel.
  
  
 0.438
RPE_3151
Coproporphyrinogen III oxidase, anaerobic; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_1971 radical SAM.
  
    0.411
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.