STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3205KEGG: pst:PSPTO2423 ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3. (322 aa)    
Predicted Functional Partners:
RPE_3194
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2611 putative aliphatic sulfonate transport membrane component. permease subunit of an ABC transporter.
 
 
 0.993
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
 
 0.987
ssuB
ABC transporter related; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 0.985
RPE_3192
KEGG: rpa:RPA2608 possible sulfonate binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3.
  
  
 
0.914
RPE_3890
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_1932 binding-protein-dependent transport systems inner membrane component.
 
  
 0.718
RPE_0106
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_0572 binding-protein-dependent transport systems inner membrane component.
 
  
 0.687
RPE_1264
TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1759 nitrate transport permease.
 
  
 0.684
RPE_3858
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA0132 ABC sulfonate transport system, permease protein.
 
  
 0.682
RPE_1215
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_2184 binding-protein-dependent transport systems inner membrane component.
 
  
 0.681
RPE_4637
TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_2055 nitrate transport permease.
 
  
 0.651
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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