STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3208ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3424 ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family. (584 aa)    
Predicted Functional Partners:
RPE_3209
PFAM: inner-membrane translocator; KEGG: bja:bll3425 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.992
RPE_3795
PFAM: inner-membrane translocator; KEGG: rpd:RPD_1892 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.969
RPE_3207
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3423 ABC transporter ATP-binding protein.
 
  
0.962
RPE_3211
PFAM: Extracellular ligand-binding receptor; KEGG: bja:bll3426 ABC transporter substrate-binding protein.
 
  
 0.950
RPE_3800
PFAM: Extracellular ligand-binding receptor; KEGG: bja:blr7848 probable substrate-binding protein.
 
  
 0.950
RPE_1000
PFAM: inner-membrane translocator; KEGG: rpa:RPA4020 possible branched-chain amino acid transport system permease protein.
  
 0.881
RPE_4213
PFAM: inner-membrane translocator; KEGG: rpa:RPA4028 possible ABC transport system permease protein.
 
  
 0.874
RPE_0594
PFAM: inner-membrane translocator; KEGG: rpa:RPA0667 putative membrane spanning subunit of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.867
RPE_1651
PFAM: inner-membrane translocator; KEGG: rpd:RPD_1779 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.862
RPE_1694
PFAM: inner-membrane translocator; KEGG: rpc:RPC_1664 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.860
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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