STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3222PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: eba:ebA2055 putative acyl-CoA dehydrogenase. (378 aa)    
Predicted Functional Partners:
RPE_3225
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: eba:ebA2038 fusion of 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.977
RPE_0674
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rpb:RPB_4604 3-hydroxyacyl-CoA dehydrogenase.
  
 0.847
RPE_3780
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rpb:RPB_1746 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.847
RPE_4517
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rpc:RPC_4447 electron transfer flavoprotein beta-subunit.
 
 0.845
RPE_4518
PFAM: electron transfer flavoprotein beta-subunit; KEGG: rpc:RPC_4448 electron transfer flavoprotein beta-subunit.
 
 
 0.835
RPE_4848
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rpd:RPD_0931 electron transfer flavoprotein, alpha subunit.
 
 0.828
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 0.803
RPE_4847
PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rpc:RPC_4878 3-hydroxybutyryl-CoA dehydrogenase.
 
 0.802
RPE_3803
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_1886 enoyl-CoA hydratase/isomerase.
 
 0.800
RPE_3223
TIGRFAM: Methylmalonyl-CoA mutase-like; PFAM: cobalamin B12-binding domain protein; KEGG: eba:ebD52 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding).
  
  
 0.787
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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