STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3229PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase, FAD-binding; KEGG: bja:blr3436 hypothetical protein. (773 aa)    
Predicted Functional Partners:
RPE_3227
PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mlr0619 probable acid-CoA ligase.
 
 0.993
RPE_3228
PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rso:RS02008 probable oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.934
RPE_3226
PFAM: Endoribonuclease L-PSP; KEGG: eba:ebA2097 hypothetical protein.
 
  
 0.931
RPE_3230
PFAM: regulatory protein, MarR; KEGG: bja:bll6077 transcriptional regulatory protein.
 
  
 0.903
RPE_4518
PFAM: electron transfer flavoprotein beta-subunit; KEGG: rpc:RPC_4448 electron transfer flavoprotein beta-subunit.
  
 
 0.834
RPE_4849
PFAM: electron transfer flavoprotein beta-subunit; KEGG: rpa:RPA4750 electron transfer flavoprotein beta chain, (ETFSS).
  
 
 0.834
RPE_4517
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rpc:RPC_4447 electron transfer flavoprotein beta-subunit.
   
 
 0.671
RPE_4848
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rpd:RPD_0931 electron transfer flavoprotein, alpha subunit.
   
 
 0.671
RPE_4170
L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: rpd:RPD_3916 L-lactate dehydrogenase (cytochrome).
  
  
 0.663
RPE_0674
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rpb:RPB_4604 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.644
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.