STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3239PFAM: FecR protein; KEGG: rpa:RPA1340 probable FecR, iron siderophore sensor protein. (341 aa)    
Predicted Functional Partners:
RPE_3240
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pae:PA0675 probable sigma-70 factor, ECF subfamily.
 
 
 0.960
RPE_3241
KEGG: rpa:RPA1338 hypothetical protein.
 
     0.944
RPE_3238
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: rpc:RPC_2997 filamentous haemagglutinin-like.
 
     0.852
RPE_2646
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_2212 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.837
RPE_3477
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_2205 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.837
RPE_2637
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_3128 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.836
RPE_4556
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_2205 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.836
RPE_2650
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_2212 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.835
RPE_3470
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpc:RPC_2905 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.835
RPE_2655
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_3128 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.833
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.