STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3243KEGG: rpc:RPC_1899 hypothetical protein. (159 aa)    
Predicted Functional Partners:
RPE_2736
PFAM: protein of unknown function DUF1365; KEGG: rpc:RPC_2555 protein of unknown function DUF1365.
 
  
 0.849
RPE_2737
PFAM: amine oxidase; KEGG: rpb:RPB_2904 amine oxidase.
 
   
 0.687
RPE_0794
TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: rpb:RPB_0487 anti-sigm factor, ChrR.
 
   
 0.604
RPE_2735
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2554 cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.593
RPE_3328
KEGG: rpa:RPA2374 hypothetical protein.
 
 
 0.494
RPE_0906
KEGG: rpc:RPC_0886 secretion protein HlyD.
 
 
 0.439
yajC
Protein translocase subunit yajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.
    
 
 0.437
RPE_2036
KEGG: rpa:RPA3612 hypothetical protein.
  
 
 0.419
RPE_2739
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rpc:RPC_2557 RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.419
RPE_2748
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rpc:RPC_2568 type I secretion outer membrane protein, TolC.
  
 
 0.419
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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