STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3256KEGG: nwi:Nwi_0261 hypothetical protein. (286 aa)    
Predicted Functional Partners:
RPE_3255
KEGG: plt:Plut_0513 hypothetical protein.
 
   
 0.963
RPE_3254
KEGG: aba:Acid345_4264 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
       0.525
RPE_0679
PFAM: Integrase, catalytic region; KEGG: sme:SMb20905 putative transposase protein.
  
     0.490
RPE_1052
PFAM: Integrase, catalytic region; KEGG: sme:SMb20905 putative transposase protein.
  
     0.483
RPE_3249
KEGG: aba:Acid345_4269 hypothetical protein.
     
 0.481
RPE_3253
T/G mismatch-specific endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
       0.477
RPE_3250
KEGG: oih:OB0176 hypothetical protein.
       0.463
RPE_3251
Endonuclease; KEGG: eba:ebA6352 endonuclease.
       0.463
RPE_3252
KEGG: aba:Acid345_4266 hypothetical protein.
       0.463
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.