STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_3259PFAM: MobA/MobL protein; KEGG: rpd:RPD_2276 MobA/MobL protein. (1038 aa)    
Predicted Functional Partners:
RPE_0460
DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase; KEGG: rpc:RPC_0387 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
 
 0.897
RPE_3260
PFAM: Prophage CP4-57 regulatory; KEGG: rpc:RPC_4521 phage transcriptional regulator, AlpA.
 
     0.870
RPE_1027
PFAM: Prophage CP4-57 regulatory; KEGG: rpc:RPC_4521 phage transcriptional regulator, AlpA.
 
     0.751
RPE_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.705
RPE_4912
TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpd:RPD_4412 ATP-dependent DNA helicase RecQ.
  
 
 0.584
RPE_3257
PFAM: Conjugal transfer TraD family protein; KEGG: rpc:RPC_4518 conjugal transfer TraD.
       0.581
RPE_3258
KEGG: rpd:RPD_2275 hypothetical protein.
       0.581
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.530
RPE_1919
KEGG: rpc:RPC_1819 hypothetical protein.
  
     0.524
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
  
 
 0.440
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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